S8 ZIPFILE README

Zip file contains 2 BED files submitted to PLOS GENETICS:
From Savadel, Hartwig, et al., 2021
files from Hank Bass, bass@bio.fsu.edu

Single Base BED file for UCSC browser, chromosomes only, B73v5
BLASTED from FASTAs with 100 bp flanks each side, retained if 100% match (Andorf, Bass, 2021)

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Moa Motif Mid Pt
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MoMoFamID_MidBaseOnB73v5_from344k_MoaMotifsUnderMFs_SavadelHartwigBass_v521d.bed

Bed file reduced back down to central base after blastover from v3 to v5
Name column retains Motif Family name (e.g. om002), unique ID (e.g. m031153, as named sequentially in B73v3), the B73v3 coordinates and motif direction.


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Moa Motif Full Motif
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MoMoFamID_MotifOnB73v5_from344k_MoaMotifsUnderMFs_SavadelHartwigBass_v521d.bed

Bed file reduced back down to motif after blastover from v3 to v5
Name column retains Motif Family name (e.g. om_m2 = om002, om_m116 = om116, dy m12 = dym12, … ), the motif family consensus, and the exact local matching B73v3 and coordinates and strand.  the 100 BP flanks were removed after blast over.

MoaMotifs_MFs_iSegBC7_b37v3_v320i_om_m116_kgaTGGGCTgs_ATCTGGGCTGT_b73v3range=1:201502280-201502490_strand=+_plus100bpFlanks