Track names: Paspalum vaginatum (seashore paspalum) protein alignment

This track shows the protein alignments of Paspalum vaginatum to B73. MaizeGDB aligned the proteome using miniprot (-ut16). Note: no additional steps were taken to confirm orthology. The proteome was downloaded from Phytozome  (https://phytozome-next.jgi.doe.gov/info/Pvaginatum_v3_1) on December 2022. Only one protein per gene was used. Each exon is color-coded based on the percent sequence identity between the protein and genome; the percent identity ranges from 0.0 (red) to 1.0 (green).

Paspalum vaginatum genome paper (https://doi.org/10.1038/s41467-022-35507-8).

The main attributes are:

‘gene_model_id’ : The name of the gene model.
‘Type’ : Either mRNA or CDS.
‘pannzer_desc’ :  Functional description for the protein based on Pannzer.
‘Length’: Protein length.
‘ID’: Internal miniprot identifier.
‘Identity’ : Percent sequence identity between the protein and genome.
‘Positive’ : Percent positive matches between the protein and genome.
‘Rank : Rank of protein alignments to the same region.’.